Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 Selenot-ps-201ENSMUST00000119098 593 ntBASIC19.2■□□□□ 0.66
Cux1P53564 Gm14247-201ENSMUST00000120950 237 ntBASIC19.2■□□□□ 0.66
Cux1P53564 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
Cux1P53564 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Cux1P53564 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Cux1P53564 Gm45706-201ENSMUST00000213063 2136 ntBASIC19.19■□□□□ 0.66
Cux1P53564 Zkscan3-207ENSMUST00000223831 2101 ntBASIC19.19■□□□□ 0.66
Cux1P53564 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Cux1P53564 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Cux1P53564 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Cux1P53564 Gm13888-201ENSMUST00000119148 422 ntBASIC19.19■□□□□ 0.66
Cux1P53564 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Cux1P53564 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Mir6958-201ENSMUST00000184207 73 ntBASIC19.19■□□□□ 0.66
Cux1P53564 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC19.19■□□□□ 0.66
Cux1P53564 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC19.19■□□□□ 0.66
Cux1P53564 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC19.19■□□□□ 0.66
Cux1P53564 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC19.19■□□□□ 0.66
Cux1P53564 Gm18041-201ENSMUST00000218210 618 ntBASIC19.19■□□□□ 0.66
Cux1P53564 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Cux1P53564 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cux1P53564 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Gm5419-201ENSMUST00000119301 527 ntBASIC19.18■□□□□ 0.66
Cux1P53564 Gm12899-201ENSMUST00000120565 551 ntBASIC19.18■□□□□ 0.66
Cux1P53564 Gm7666-201ENSMUST00000146631 819 ntBASIC19.18■□□□□ 0.66
Cux1P53564 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC19.18■□□□□ 0.66
Cux1P53564 Gm45550-201ENSMUST00000209380 946 ntBASIC19.18■□□□□ 0.66
Cux1P53564 Gm9797-202ENSMUST00000218003 294 ntBASIC19.18■□□□□ 0.66
Cux1P53564 AC169036.1-201ENSMUST00000227994 296 ntBASIC19.18■□□□□ 0.66
Cux1P53564 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Gm10288-201ENSMUST00000084614 537 ntBASIC19.18■□□□□ 0.66
Cux1P53564 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Cux1P53564 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC19.18■□□□□ 0.66
Cux1P53564 AC169511.2-201ENSMUST00000226674 2063 ntBASIC19.18■□□□□ 0.66
Cux1P53564 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC19.18■□□□□ 0.66
Cux1P53564 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cux1P53564 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
Cux1P53564 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Gm37131-201ENSMUST00000192502 1561 ntBASIC19.17■□□□□ 0.66
Cux1P53564 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Cux1P53564 Gm18227-201ENSMUST00000211082 1468 ntBASIC19.17■□□□□ 0.66
Cux1P53564 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC19.17■□□□□ 0.66
Cux1P53564 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Gm11628-201ENSMUST00000117568 171 ntBASIC19.17■□□□□ 0.66
Cux1P53564 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC19.17■□□□□ 0.66
Cux1P53564 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Gm43830-201ENSMUST00000198760 1067 ntBASIC19.17■□□□□ 0.66
Cux1P53564 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC19.17■□□□□ 0.66
Cux1P53564 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cux1P53564 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Cux1P53564 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Cux1P53564 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Cux1P53564 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
Cux1P53564 Gm8194-201ENSMUST00000159783 859 ntBASIC19.16■□□□□ 0.66
Cux1P53564 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Cux1P53564 Gm44980-201ENSMUST00000205826 314 ntBASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 76.4 ms