Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Msx1P13297 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Msx1P13297 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.21□□□□□ -0.46
Msx1P13297 Gm45684-201ENSMUST00000210244 1571 ntBASIC12.21□□□□□ -0.46
Msx1P13297 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Msx1P13297 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC12.21□□□□□ -0.46
Msx1P13297 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Msx1P13297 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Msx1P13297 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC12.21□□□□□ -0.46
Msx1P13297 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Msx1P13297 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Msx1P13297 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Msx1P13297 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Msx1P13297 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Msx1P13297 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Gm44975-201ENSMUST00000207435 1390 ntBASIC12.2□□□□□ -0.46
Msx1P13297 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Hormad2-203ENSMUST00000109949 1343 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.2□□□□□ -0.46
Msx1P13297 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Msx1P13297 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Msx1P13297 Defb30-202ENSMUST00000111207 989 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC12.2□□□□□ -0.46
Msx1P13297 Gm13297-201ENSMUST00000120205 934 ntBASIC12.2□□□□□ -0.46
Msx1P13297 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC12.2□□□□□ -0.46
Msx1P13297 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12.2□□□□□ -0.46
Msx1P13297 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Msx1P13297 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC12.2□□□□□ -0.46
Msx1P13297 Gm3476-203ENSMUST00000190582 612 ntTSL 5 BASIC12.2□□□□□ -0.46
Msx1P13297 Rps4l-202ENSMUST00000204242 789 ntBASIC12.2□□□□□ -0.46
Msx1P13297 Olfr1434-203ENSMUST00000208197 1229 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Msx1P13297 Gm7046-201ENSMUST00000221351 977 ntBASIC12.2□□□□□ -0.46
Msx1P13297 mt-Nd2-201ENSMUST00000082396 1038 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Msx1P13297 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Msx1P13297 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.2□□□□□ -0.46
Msx1P13297 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 AC113441.2-201ENSMUST00000221538 1468 ntBASIC12.2□□□□□ -0.46
Msx1P13297 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Msx1P13297 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Msx1P13297 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Gm38262-201ENSMUST00000194760 1382 ntBASIC12.19□□□□□ -0.46
Msx1P13297 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Msx1P13297 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Gm38094-201ENSMUST00000195864 2978 ntBASIC12.19□□□□□ -0.46
Msx1P13297 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Gm43579-201ENSMUST00000202387 1307 ntBASIC12.19□□□□□ -0.46
Msx1P13297 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.19□□□□□ -0.46
Msx1P13297 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Tm6sf1-202ENSMUST00000119543 1066 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Gm4986-201ENSMUST00000119731 549 ntBASIC12.19□□□□□ -0.46
Msx1P13297 Gm11658-201ENSMUST00000120913 1008 ntBASIC12.19□□□□□ -0.46
Msx1P13297 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC12.19□□□□□ -0.46
Msx1P13297 Gm11672-201ENSMUST00000140380 645 ntTSL 5 BASIC12.19□□□□□ -0.46
Msx1P13297 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Gm2467-201ENSMUST00000182266 1010 ntBASIC12.19□□□□□ -0.46
Msx1P13297 Gm6981-201ENSMUST00000182467 1008 ntBASIC12.19□□□□□ -0.46
Msx1P13297 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC12.19□□□□□ -0.46
Msx1P13297 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC12.19□□□□□ -0.46
Msx1P13297 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Msx1P13297 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC12.19□□□□□ -0.46
Msx1P13297 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Abhd6-203ENSMUST00000225234 1958 ntBASIC12.19□□□□□ -0.46
Msx1P13297 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Msx1P13297 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 95.5 ms