Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm17870-201ENSMUST00000219489 1174 ntBASIC14.26□□□□□ -0.13
Smc1aQ9CU62 CT009713.10-202ENSMUST00000225734 696 ntBASIC14.26□□□□□ -0.13
Smc1aQ9CU62 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gm9823-201ENSMUST00000051212 327 ntBASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Gm28323-201ENSMUST00000186817 2499 ntBASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Gm29608-201ENSMUST00000190444 463 ntBASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Gm38266-201ENSMUST00000194931 421 ntBASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Gm3961-201ENSMUST00000204425 994 ntBASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Rn7sk-201ENSMUST00000083103 331 ntBASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Gm26315-201ENSMUST00000083890 321 ntBASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Gm4782-201ENSMUST00000168705 2046 ntBASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Gm45643-201ENSMUST00000211364 1484 ntBASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Smc1aQ9CU62 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 AC151895.1-201ENSMUST00000219025 1742 ntBASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Gm11400-201ENSMUST00000120853 1214 ntBASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Gm37008-201ENSMUST00000195712 319 ntBASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 AC122314.1-201ENSMUST00000223056 2239 ntBASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Smc1aQ9CU62 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Smc1aQ9CU62 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Smc1aQ9CU62 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms