Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Gm4913-201ENSMUST00000117075 1290 ntBASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Gm26737-201ENSMUST00000181106 2151 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Gm45841-201ENSMUST00000207700 164 ntBASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Trim61-201ENSMUST00000078409 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Gm37931-201ENSMUST00000194686 2866 ntBASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc9Q8VC31 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Gm15500-202ENSMUST00000071641 1019 ntBASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Nrn1-204ENSMUST00000224323 1779 ntBASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc9Q8VC31 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Gm6973-201ENSMUST00000117080 721 ntBASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Gm20553-201ENSMUST00000204205 844 ntBASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 AC139350.3-201ENSMUST00000226151 420 ntBASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Zfp114-203ENSMUST00000206547 3154 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Ptprm-203ENSMUST00000224091 3773 ntBASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Kcnn3-201ENSMUST00000000811 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Thoc5-201ENSMUST00000038237 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc9Q8VC31 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Olfr1490-202ENSMUST00000213900 5165 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Gm12017-201ENSMUST00000122453 1003 ntBASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Gm5479-201ENSMUST00000160578 435 ntBASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC15.27■□□□□ 0.04
Ccdc9Q8VC31 Gm9630-201ENSMUST00000178304 885 ntBASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms