Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Tyms-ps-201ENSMUST00000219550 915 ntBASIC14.28□□□□□ -0.12
Ushbp1Q8R370 AC134254.1-201ENSMUST00000221362 167 ntBASIC14.28□□□□□ -0.12
Ushbp1Q8R370 CT009713.10-201ENSMUST00000225013 1986 ntBASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Gm2824-203ENSMUST00000226189 1228 ntBASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Gm10146-201ENSMUST00000072739 309 ntBASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ushbp1Q8R370 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ushbp1Q8R370 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ushbp1Q8R370 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ushbp1Q8R370 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ushbp1Q8R370 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Ushbp1Q8R370 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ushbp1Q8R370 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ushbp1Q8R370 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ushbp1Q8R370 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ushbp1Q8R370 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Ushbp1Q8R370 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Gm5638-201ENSMUST00000118618 1258 ntBASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Gm25261-201ENSMUST00000157416 134 ntBASIC14.27□□□□□ -0.13
Ushbp1Q8R370 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Gm26927-201ENSMUST00000182385 965 ntBASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ushbp1Q8R370 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Gm14608-201ENSMUST00000120030 1553 ntBASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Gm7029-201ENSMUST00000173226 450 ntBASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Mir3547-201ENSMUST00000175461 88 ntBASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Gm7895-201ENSMUST00000187459 1173 ntBASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Gm43416-201ENSMUST00000201916 1015 ntBASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC14.26□□□□□ -0.13
Ushbp1Q8R370 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 77.4 ms