Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Gm13809-201ENSMUST00000117921 597 ntBASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Gm15131-201ENSMUST00000119124 595 ntBASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Gm14247-201ENSMUST00000120950 237 ntBASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Gm15782-201ENSMUST00000121073 445 ntBASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd4Q6PDQ2 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm18227-201ENSMUST00000211082 1468 ntBASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm23085-201ENSMUST00000157849 293 ntBASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm8100-201ENSMUST00000182906 988 ntBASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm4482-201ENSMUST00000200876 742 ntBASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm43916-201ENSMUST00000205062 967 ntBASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 AC166992.1-201ENSMUST00000216356 565 ntBASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm5705-201ENSMUST00000066241 711 ntBASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm38058-201ENSMUST00000194323 4368 ntBASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm12579-201ENSMUST00000118040 783 ntBASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gm28686-201ENSMUST00000187404 609 ntBASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Chd4Q6PDQ2 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 AC154262.2-202ENSMUST00000225158 1331 ntBASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Gm6485-201ENSMUST00000160676 439 ntBASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Gm10288-201ENSMUST00000084614 537 ntBASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Chd4Q6PDQ2 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC16.27■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms