Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm43045-201ENSMUST00000198725 2095 ntBASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm13296-201ENSMUST00000117854 997 ntBASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm43364-201ENSMUST00000196046 3274 ntBASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ccdc88aQ5SNZ0 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm7003-201ENSMUST00000195089 312 ntBASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm19994-201ENSMUST00000217086 586 ntBASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm37737-201ENSMUST00000195013 1638 ntBASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm4864-201ENSMUST00000219894 1461 ntBASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ccdc88aQ5SNZ0 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm26616-202ENSMUST00000195676 3107 ntBASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Ccdc88aQ5SNZ0 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC14.49□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 65.4 ms