Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdh11P55288 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdh11P55288 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdh11P55288 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC11.62□□□□□ -0.55
Cdh11P55288 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Cdh11P55288 AC114008.2-201ENSMUST00000227699 1347 ntBASIC11.62□□□□□ -0.55
Cdh11P55288 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC11.62□□□□□ -0.55
Cdh11P55288 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC11.62□□□□□ -0.55
Cdh11P55288 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC11.62□□□□□ -0.55
Cdh11P55288 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Gm11814-201ENSMUST00000119515 929 ntBASIC11.62□□□□□ -0.55
Cdh11P55288 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC11.62□□□□□ -0.55
Cdh11P55288 Gm8835-201ENSMUST00000173096 1169 ntBASIC11.62□□□□□ -0.55
Cdh11P55288 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Cdh11P55288 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Gm5161-201ENSMUST00000075243 853 ntBASIC11.62□□□□□ -0.55
Cdh11P55288 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Cdh11P55288 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Paupar-201ENSMUST00000194826 3482 ntBASIC11.62□□□□□ -0.55
Cdh11P55288 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC11.62□□□□□ -0.55
Cdh11P55288 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC11.62□□□□□ -0.55
Cdh11P55288 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Cdh11P55288 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdh11P55288 Gm37391-201ENSMUST00000194891 2318 ntBASIC11.61□□□□□ -0.55
Cdh11P55288 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Cdh11P55288 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Cdh11P55288 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Cdh11P55288 Gm10728-201ENSMUST00000194292 1829 ntBASIC11.61□□□□□ -0.55
Cdh11P55288 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC11.61□□□□□ -0.55
Cdh11P55288 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Gm13886-201ENSMUST00000117876 1183 ntBASIC11.61□□□□□ -0.55
Cdh11P55288 Gm12390-201ENSMUST00000117897 397 ntBASIC11.61□□□□□ -0.55
Cdh11P55288 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
Cdh11P55288 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC11.61□□□□□ -0.55
Cdh11P55288 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC11.61□□□□□ -0.55
Cdh11P55288 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC11.61□□□□□ -0.55
Cdh11P55288 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Gm38230-201ENSMUST00000193572 1159 ntBASIC11.61□□□□□ -0.55
Cdh11P55288 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC11.61□□□□□ -0.55
Cdh11P55288 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Gm17330-201ENSMUST00000221047 165 ntBASIC11.61□□□□□ -0.55
Cdh11P55288 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Cdh11P55288 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC11.61□□□□□ -0.55
Cdh11P55288 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Gm9025-201ENSMUST00000122415 1575 ntBASIC11.61□□□□□ -0.55
Cdh11P55288 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC11.61□□□□□ -0.55
Cdh11P55288 AC113060.1-201ENSMUST00000225689 1573 ntBASIC11.61□□□□□ -0.55
Cdh11P55288 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Cdh11P55288 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC11.61□□□□□ -0.55
Cdh11P55288 Gm13722-201ENSMUST00000117964 3066 ntBASIC11.61□□□□□ -0.55
Cdh11P55288 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdh11P55288 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms