Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm21759-201ENSMUST00000178345 1828 ntBASIC16.42■□□□□ 0.22
Col18a1P39061 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Col18a1P39061 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Col18a1P39061 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC16.41■□□□□ 0.22
Col18a1P39061 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC16.41■□□□□ 0.22
Col18a1P39061 AC113082.1-201ENSMUST00000217324 327 ntBASIC16.41■□□□□ 0.22
Col18a1P39061 CT030135.2-201ENSMUST00000225255 893 ntBASIC16.41■□□□□ 0.22
Col18a1P39061 AC130477.1-201ENSMUST00000226982 420 ntBASIC16.41■□□□□ 0.22
Col18a1P39061 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC16.41■□□□□ 0.22
Col18a1P39061 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Col18a1P39061 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Etv1-205ENSMUST00000160856 1474 ntTSL 5 BASIC16.41■□□□□ 0.22
Col18a1P39061 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Col18a1P39061 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Col18a1P39061 Gm6630-201ENSMUST00000119199 454 ntBASIC16.41■□□□□ 0.22
Col18a1P39061 Gm26982-201ENSMUST00000182250 1151 ntBASIC16.41■□□□□ 0.22
Col18a1P39061 Gm43852-201ENSMUST00000202098 917 ntBASIC16.41■□□□□ 0.22
Col18a1P39061 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Col18a1P39061 Gm39288-201ENSMUST00000210554 446 ntBASIC16.41■□□□□ 0.22
Col18a1P39061 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC16.41■□□□□ 0.22
Col18a1P39061 Gm2553-201ENSMUST00000215986 605 ntBASIC16.41■□□□□ 0.22
Col18a1P39061 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Gm18294-201ENSMUST00000176980 1748 ntBASIC16.41■□□□□ 0.22
Col18a1P39061 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col18a1P39061 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Gm6655-201ENSMUST00000201932 1309 ntBASIC16.4■□□□□ 0.22
Col18a1P39061 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
Col18a1P39061 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
Col18a1P39061 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC16.4■□□□□ 0.22
Col18a1P39061 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Col18a1P39061 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC16.4■□□□□ 0.22
Col18a1P39061 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Gm6108-201ENSMUST00000208365 367 ntBASIC16.4■□□□□ 0.22
Col18a1P39061 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC16.4■□□□□ 0.22
Col18a1P39061 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Gm26035-201ENSMUST00000083065 308 ntBASIC16.4■□□□□ 0.22
Col18a1P39061 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col18a1P39061 Gm10728-201ENSMUST00000194292 1829 ntBASIC16.39■□□□□ 0.22
Col18a1P39061 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Col18a1P39061 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Col18a1P39061 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col18a1P39061 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col18a1P39061 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col18a1P39061 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col18a1P39061 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col18a1P39061 Gm11619-201ENSMUST00000117474 237 ntBASIC16.39■□□□□ 0.21
Col18a1P39061 Gm6322-201ENSMUST00000118789 1004 ntBASIC16.39■□□□□ 0.21
Col18a1P39061 Gm15615-201ENSMUST00000118876 198 ntBASIC16.39■□□□□ 0.21
Col18a1P39061 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC16.39■□□□□ 0.21
Col18a1P39061 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col18a1P39061 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
Col18a1P39061 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC16.39■□□□□ 0.21
Col18a1P39061 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC16.39■□□□□ 0.21
Col18a1P39061 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC16.39■□□□□ 0.21
Col18a1P39061 Gm19015-201ENSMUST00000184002 1189 ntBASIC16.39■□□□□ 0.21
Col18a1P39061 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC16.39■□□□□ 0.21
Col18a1P39061 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Col18a1P39061 Gm43854-201ENSMUST00000200418 394 ntBASIC16.39■□□□□ 0.21
Col18a1P39061 Gm7082-201ENSMUST00000209880 969 ntBASIC16.39■□□□□ 0.21
Col18a1P39061 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
Col18a1P39061 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col18a1P39061 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col18a1P39061 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
Col18a1P39061 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC16.39■□□□□ 0.21
Col18a1P39061 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Col18a1P39061 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col18a1P39061 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col18a1P39061 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Col18a1P39061 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Col18a1P39061 Gm42769-201ENSMUST00000198576 1659 ntBASIC16.39■□□□□ 0.21
Col18a1P39061 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms