Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC10.4□□□□□ -0.74
Sdc1P18828 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC10.4□□□□□ -0.74
Sdc1P18828 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC10.4□□□□□ -0.74
Sdc1P18828 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC10.4□□□□□ -0.74
Sdc1P18828 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC10.4□□□□□ -0.74
Sdc1P18828 Gm5566-201ENSMUST00000116118 459 ntBASIC10.4□□□□□ -0.74
Sdc1P18828 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC10.4□□□□□ -0.74
Sdc1P18828 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC10.4□□□□□ -0.74
Sdc1P18828 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Ighv1-60-201ENSMUST00000195816 405 ntBASIC10.4□□□□□ -0.74
Sdc1P18828 Gm44492-201ENSMUST00000197012 141 ntBASIC10.4□□□□□ -0.74
Sdc1P18828 Gm18057-201ENSMUST00000208220 503 ntBASIC10.4□□□□□ -0.74
Sdc1P18828 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC10.4□□□□□ -0.74
Sdc1P18828 Gm18049-201ENSMUST00000208909 581 ntBASIC10.4□□□□□ -0.74
Sdc1P18828 Gm5425-201ENSMUST00000214125 459 ntBASIC10.4□□□□□ -0.74
Sdc1P18828 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC10.4□□□□□ -0.74
Sdc1P18828 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC10.4□□□□□ -0.74
Sdc1P18828 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Sdc1P18828 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Sdc1P18828 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC10.4□□□□□ -0.74
Sdc1P18828 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC10.4□□□□□ -0.74
Sdc1P18828 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Sdc1P18828 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.75
Sdc1P18828 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.75
Sdc1P18828 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.75
Sdc1P18828 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Sdc1P18828 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.75
Sdc1P18828 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Sdc1P18828 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Sdc1P18828 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.75
Sdc1P18828 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.75
Sdc1P18828 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Gm36987-201ENSMUST00000194704 2979 ntBASIC10.39□□□□□ -0.75
Sdc1P18828 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Sdc1P18828 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Sdc1P18828 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Ank2-226ENSMUST00000189368 339 ntBASIC10.39□□□□□ -0.75
Sdc1P18828 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC10.39□□□□□ -0.75
Sdc1P18828 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Umpk-ps-201ENSMUST00000211897 827 ntBASIC10.39□□□□□ -0.75
Sdc1P18828 Gm16476-201ENSMUST00000221544 139 ntBASIC10.39□□□□□ -0.75
Sdc1P18828 AC134335.2-201ENSMUST00000227660 440 ntBASIC10.39□□□□□ -0.75
Sdc1P18828 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC10.39□□□□□ -0.75
Sdc1P18828 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms