Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Gm44094-201ENSMUST00000204703 2030 ntBASIC14.36□□□□□ -0.11
Syne4Q8CII8 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Gm13035-201ENSMUST00000117496 342 ntBASIC14.36□□□□□ -0.11
Syne4Q8CII8 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC14.36□□□□□ -0.11
Syne4Q8CII8 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Syne4Q8CII8 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Gm6506-201ENSMUST00000119775 1136 ntBASIC14.35□□□□□ -0.11
Syne4Q8CII8 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC14.35□□□□□ -0.11
Syne4Q8CII8 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Gm8285-201ENSMUST00000208293 759 ntBASIC14.35□□□□□ -0.11
Syne4Q8CII8 AC159103.1-201ENSMUST00000228325 429 ntBASIC14.35□□□□□ -0.11
Syne4Q8CII8 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Gm10179-201ENSMUST00000086233 688 ntBASIC14.35□□□□□ -0.11
Syne4Q8CII8 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Gm44999-201ENSMUST00000207456 1493 ntBASIC14.35□□□□□ -0.11
Syne4Q8CII8 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Gm5525-201ENSMUST00000190438 1312 ntBASIC14.35□□□□□ -0.11
Syne4Q8CII8 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC14.35□□□□□ -0.11
Syne4Q8CII8 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Syne4Q8CII8 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Syne4Q8CII8 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms