Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Gm14928-201ENSMUST00000120198 477 ntBASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Gm11918-201ENSMUST00000121660 179 ntBASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ccdc40Q8BI79 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Mir692-1-201ENSMUST00000102263 109 ntBASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gm13612-201ENSMUST00000119276 390 ntBASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gm42929-201ENSMUST00000198374 1286 ntBASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gm6745-201ENSMUST00000199216 526 ntBASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gm7287-201ENSMUST00000205267 602 ntBASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gm45384-201ENSMUST00000210451 277 ntBASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gm18636-201ENSMUST00000218846 1066 ntBASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 AC138604.1-201ENSMUST00000226969 739 ntBASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gm43860-201ENSMUST00000201742 2705 ntBASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Gm15991-202ENSMUST00000212123 3565 ntBASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ccdc40Q8BI79 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Gm10176-201ENSMUST00000159707 2264 ntBASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
Ccdc40Q8BI79 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms