Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Gm38241-201ENSMUST00000192641 898 ntBASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Rassf8-202ENSMUST00000058538 1131 ntBASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Ubfd1Q78JW9 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Grk6-205ENSMUST00000224653 2976 ntBASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Gm13875-201ENSMUST00000120162 282 ntBASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Gm37201-201ENSMUST00000191845 523 ntBASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Ighv1-62-201ENSMUST00000193406 350 ntBASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Gm18041-201ENSMUST00000218210 618 ntBASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 AC166095.1-201ENSMUST00000223731 1241 ntBASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ubfd1Q78JW9 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Gm5863-201ENSMUST00000121760 1008 ntBASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ubfd1Q78JW9 Gm17376-201ENSMUST00000166016 84 ntBASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms