Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim28Q62318 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim28Q62318 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim28Q62318 Ntrk2-209ENSMUST00000225950 2640 ntBASIC16.45■□□□□ 0.22
Trim28Q62318 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim28Q62318 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim28Q62318 Gm43721-201ENSMUST00000199677 2313 ntBASIC16.45■□□□□ 0.22
Trim28Q62318 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim28Q62318 Gm5846-201ENSMUST00000193146 1414 ntBASIC16.45■□□□□ 0.22
Trim28Q62318 AC154262.2-202ENSMUST00000225158 1331 ntBASIC16.45■□□□□ 0.22
Trim28Q62318 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Trim28Q62318 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trim28Q62318 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Trim28Q62318 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC16.44■□□□□ 0.22
Trim28Q62318 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Trim28Q62318 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC16.44■□□□□ 0.22
Trim28Q62318 Gm24934-201ENSMUST00000103764 111 ntBASIC16.44■□□□□ 0.22
Trim28Q62318 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC16.44■□□□□ 0.22
Trim28Q62318 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Gm25732-201ENSMUST00000175168 60 ntBASIC16.44■□□□□ 0.22
Trim28Q62318 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Trim28Q62318 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC16.44■□□□□ 0.22
Trim28Q62318 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC16.44■□□□□ 0.22
Trim28Q62318 Mettl6-204ENSMUST00000227595 1027 ntBASIC16.44■□□□□ 0.22
Trim28Q62318 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Trim28Q62318 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC16.44■□□□□ 0.22
Trim28Q62318 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trim28Q62318 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trim28Q62318 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim28Q62318 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trim28Q62318 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Gm24749-201ENSMUST00000157838 343 ntBASIC16.43■□□□□ 0.22
Trim28Q62318 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trim28Q62318 Gm9230-201ENSMUST00000188228 532 ntBASIC16.43■□□□□ 0.22
Trim28Q62318 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trim28Q62318 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC16.43■□□□□ 0.22
Trim28Q62318 Rps4l-202ENSMUST00000204242 789 ntBASIC16.43■□□□□ 0.22
Trim28Q62318 AC154252.2-201ENSMUST00000223593 767 ntBASIC16.43■□□□□ 0.22
Trim28Q62318 AC159205.5-202ENSMUST00000224849 386 ntBASIC16.43■□□□□ 0.22
Trim28Q62318 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Trim28Q62318 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC16.43■□□□□ 0.22
Trim28Q62318 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC16.43■□□□□ 0.22
Trim28Q62318 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim28Q62318 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Trim28Q62318 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Gm12217-201ENSMUST00000118858 696 ntBASIC16.42■□□□□ 0.22
Trim28Q62318 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Trim28Q62318 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Trim28Q62318 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Trim28Q62318 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
Trim28Q62318 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Trim28Q62318 Gm45433-201ENSMUST00000209386 247 ntBASIC16.42■□□□□ 0.22
Trim28Q62318 Aprt-ps-201ENSMUST00000212311 505 ntBASIC16.42■□□□□ 0.22
Trim28Q62318 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Gm28323-201ENSMUST00000186817 2499 ntBASIC16.42■□□□□ 0.22
Trim28Q62318 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms