Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC10.89□□□□□ -0.67
Col8a1Q00780 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC10.89□□□□□ -0.67
Col8a1Q00780 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Gm13408-201ENSMUST00000119822 798 ntBASIC10.89□□□□□ -0.67
Col8a1Q00780 Gm13935-201ENSMUST00000121859 798 ntBASIC10.89□□□□□ -0.67
Col8a1Q00780 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC10.89□□□□□ -0.67
Col8a1Q00780 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Col8a1Q00780 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC10.89□□□□□ -0.67
Col8a1Q00780 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC10.89□□□□□ -0.67
Col8a1Q00780 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC10.89□□□□□ -0.67
Col8a1Q00780 AC159819.2-201ENSMUST00000216151 342 ntBASIC10.89□□□□□ -0.67
Col8a1Q00780 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Gzmn-202ENSMUST00000225535 989 ntBASIC10.89□□□□□ -0.67
Col8a1Q00780 AC135469.1-201ENSMUST00000225984 772 ntBASIC10.89□□□□□ -0.67
Col8a1Q00780 Gm30238-201ENSMUST00000195528 2603 ntBASIC10.89□□□□□ -0.67
Col8a1Q00780 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC10.89□□□□□ -0.67
Col8a1Q00780 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Col8a1Q00780 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC10.89□□□□□ -0.67
Col8a1Q00780 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Col8a1Q00780 Gm8228-201ENSMUST00000189949 2192 ntBASIC10.89□□□□□ -0.67
Col8a1Q00780 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Col8a1Q00780 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC10.88□□□□□ -0.67
Col8a1Q00780 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Gm4864-201ENSMUST00000219894 1461 ntBASIC10.88□□□□□ -0.67
Col8a1Q00780 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC10.88□□□□□ -0.67
Col8a1Q00780 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC10.88□□□□□ -0.67
Col8a1Q00780 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC10.88□□□□□ -0.67
Col8a1Q00780 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Gm25043-201ENSMUST00000158604 212 ntBASIC10.88□□□□□ -0.67
Col8a1Q00780 Gm5070-201ENSMUST00000177599 862 ntBASIC10.88□□□□□ -0.67
Col8a1Q00780 Gm5732-201ENSMUST00000182596 1007 ntBASIC10.88□□□□□ -0.67
Col8a1Q00780 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC10.88□□□□□ -0.67
Col8a1Q00780 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC10.88□□□□□ -0.67
Col8a1Q00780 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC10.88□□□□□ -0.67
Col8a1Q00780 Ighv5-7-201ENSMUST00000192302 244 ntBASIC10.88□□□□□ -0.67
Col8a1Q00780 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC10.88□□□□□ -0.67
Col8a1Q00780 Gm45219-201ENSMUST00000205602 465 ntBASIC10.88□□□□□ -0.67
Col8a1Q00780 Gm10752-201ENSMUST00000218348 729 ntBASIC10.88□□□□□ -0.67
Col8a1Q00780 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC10.88□□□□□ -0.67
Col8a1Q00780 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC10.88□□□□□ -0.67
Col8a1Q00780 AC131330.1-201ENSMUST00000227814 1015 ntBASIC10.88□□□□□ -0.67
Col8a1Q00780 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Col8a1Q00780 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC10.88□□□□□ -0.67
Col8a1Q00780 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC10.88□□□□□ -0.67
Col8a1Q00780 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Col8a1Q00780 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Col8a1Q00780 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Col8a1Q00780 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Col8a1Q00780 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC10.87□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 71.7 ms