Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Gm45342-201ENSMUST00000210903 1363 ntBASIC11.35□□□□□ -0.59
Col5a1O88207 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Col5a1O88207 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Col5a1O88207 Gm24934-201ENSMUST00000103764 111 ntBASIC11.35□□□□□ -0.59
Col5a1O88207 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Gm15711-201ENSMUST00000118889 535 ntBASIC11.35□□□□□ -0.59
Col5a1O88207 Gm12899-201ENSMUST00000120565 551 ntBASIC11.35□□□□□ -0.59
Col5a1O88207 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC11.35□□□□□ -0.59
Col5a1O88207 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC11.35□□□□□ -0.59
Col5a1O88207 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Gm23218-201ENSMUST00000158124 276 ntBASIC11.35□□□□□ -0.59
Col5a1O88207 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC11.35□□□□□ -0.59
Col5a1O88207 Gm27627-201ENSMUST00000183644 150 ntBASIC11.35□□□□□ -0.59
Col5a1O88207 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Gm42937-201ENSMUST00000197360 752 ntBASIC11.35□□□□□ -0.59
Col5a1O88207 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC11.35□□□□□ -0.59
Col5a1O88207 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC11.35□□□□□ -0.59
Col5a1O88207 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC11.35□□□□□ -0.59
Col5a1O88207 CT030637.1-201ENSMUST00000228016 669 ntBASIC11.35□□□□□ -0.59
Col5a1O88207 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC11.35□□□□□ -0.59
Col5a1O88207 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Col5a1O88207 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
Col5a1O88207 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Col5a1O88207 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC11.34□□□□□ -0.59
Col5a1O88207 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Col5a1O88207 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Gm11892-201ENSMUST00000117711 1202 ntBASIC11.34□□□□□ -0.59
Col5a1O88207 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Gm38094-201ENSMUST00000195864 2978 ntBASIC11.34□□□□□ -0.59
Col5a1O88207 AC153505.1-201ENSMUST00000218819 1071 ntBASIC11.34□□□□□ -0.59
Col5a1O88207 CT009713.8-201ENSMUST00000225448 560 ntBASIC11.34□□□□□ -0.59
Col5a1O88207 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC11.34□□□□□ -0.59
Col5a1O88207 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC11.34□□□□□ -0.59
Col5a1O88207 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Col5a1O88207 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC11.34□□□□□ -0.59
Col5a1O88207 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Col5a1O88207 Gm7002-201ENSMUST00000221386 2165 ntBASIC11.34□□□□□ -0.59
Col5a1O88207 AC241621.2-201ENSMUST00000223991 2151 ntBASIC11.34□□□□□ -0.59
Col5a1O88207 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC11.34□□□□□ -0.59
Col5a1O88207 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.59
Col5a1O88207 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.59
Col5a1O88207 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Col5a1O88207 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC11.33□□□□□ -0.6
Col5a1O88207 Gm43045-201ENSMUST00000198725 2095 ntBASIC11.33□□□□□ -0.6
Col5a1O88207 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC11.33□□□□□ -0.6
Col5a1O88207 Gm22138-201ENSMUST00000158748 128 ntBASIC11.33□□□□□ -0.6
Col5a1O88207 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Gm5616-201ENSMUST00000165252 384 ntBASIC11.33□□□□□ -0.6
Col5a1O88207 Gm8741-201ENSMUST00000174736 384 ntBASIC11.33□□□□□ -0.6
Col5a1O88207 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Gm9873-201ENSMUST00000063891 1097 ntBASIC11.33□□□□□ -0.6
Col5a1O88207 Mir219a-1-201ENSMUST00000083621 110 ntBASIC11.33□□□□□ -0.6
Col5a1O88207 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Col5a1O88207 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 58.3 ms