Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ccdc9Q8VC31 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ccdc9Q8VC31 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ccdc9Q8VC31 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ccdc9Q8VC31 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ccdc9Q8VC31 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ccdc9Q8VC31 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Med19-201ENSMUST00000102645 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ccdc9Q8VC31 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Gm29741-201ENSMUST00000192667 421 ntBASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Gm45612-201ENSMUST00000211320 160 ntBASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ccdc9Q8VC31 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Fbxo40-201ENSMUST00000075869 5137 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Gm6226-201ENSMUST00000117765 1146 ntBASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Gm45098-201ENSMUST00000207179 657 ntBASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Ndufaf2-202ENSMUST00000223734 556 ntBASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 AC138604.1-201ENSMUST00000226969 739 ntBASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Rxra-206ENSMUST00000166775 3216 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Gm42840-201ENSMUST00000200303 2251 ntBASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Gm10829-201ENSMUST00000202084 2988 ntBASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Gm44826-201ENSMUST00000207648 2332 ntBASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ccdc9Q8VC31 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
Ccdc9Q8VC31 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC15.33■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 72.2 ms