Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scaf4Q6PFF0 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scaf4Q6PFF0 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.6□□□□□ -0.39
Scaf4Q6PFF0 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scaf4Q6PFF0 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scaf4Q6PFF0 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scaf4Q6PFF0 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Scaf4Q6PFF0 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Gm43677-201ENSMUST00000198098 2378 ntBASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Gm15371-201ENSMUST00000117057 784 ntBASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Ighv8-10-201ENSMUST00000199579 358 ntBASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Gm7730-201ENSMUST00000212486 454 ntBASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.59□□□□□ -0.39
Scaf4Q6PFF0 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Scaf4Q6PFF0 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Scaf4Q6PFF0 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Gm5687-201ENSMUST00000118252 640 ntBASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Gm7063-201ENSMUST00000186840 981 ntBASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 AC139382.1-201ENSMUST00000221402 498 ntBASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 AC132863.2-201ENSMUST00000226643 799 ntBASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Scaf4Q6PFF0 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Gm15321-201ENSMUST00000121290 288 ntBASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Gm14719-201ENSMUST00000121891 340 ntBASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Itm2b-204ENSMUST00000228637 783 ntBASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Scaf4Q6PFF0 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms