Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Col18a1P39061 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Col18a1P39061 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col18a1P39061 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col18a1P39061 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC16.48■□□□□ 0.23
Col18a1P39061 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col18a1P39061 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col18a1P39061 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Col18a1P39061 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Gm18782-201ENSMUST00000209023 1399 ntBASIC16.47■□□□□ 0.23
Col18a1P39061 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Col18a1P39061 Gm25053-201ENSMUST00000103982 133 ntBASIC16.47■□□□□ 0.23
Col18a1P39061 Gm25922-201ENSMUST00000104281 130 ntBASIC16.47■□□□□ 0.23
Col18a1P39061 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Gm11578-201ENSMUST00000118530 459 ntBASIC16.47■□□□□ 0.23
Col18a1P39061 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Col18a1P39061 Gm14213-201ENSMUST00000119778 768 ntBASIC16.47■□□□□ 0.23
Col18a1P39061 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Col18a1P39061 Gm24679-201ENSMUST00000158762 111 ntBASIC16.47■□□□□ 0.23
Col18a1P39061 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Col18a1P39061 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC16.47■□□□□ 0.23
Col18a1P39061 Gm28529-201ENSMUST00000186159 387 ntTSL 3 BASIC16.47■□□□□ 0.23
Col18a1P39061 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
Col18a1P39061 Gm25053-202ENSMUST00000199731 132 ntBASIC16.47■□□□□ 0.23
Col18a1P39061 Nps-202ENSMUST00000210697 1082 ntTSL 5 BASIC16.47■□□□□ 0.23
Col18a1P39061 AC122346.3-201ENSMUST00000223983 306 ntBASIC16.47■□□□□ 0.23
Col18a1P39061 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Col18a1P39061 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC16.47■□□□□ 0.23
Col18a1P39061 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col18a1P39061 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Col18a1P39061 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Col18a1P39061 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC16.46■□□□□ 0.23
Col18a1P39061 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Col18a1P39061 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Col18a1P39061 Gm9135-201ENSMUST00000182963 990 ntBASIC16.46■□□□□ 0.23
Col18a1P39061 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC16.46■□□□□ 0.23
Col18a1P39061 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
Col18a1P39061 Gm6390-201ENSMUST00000215034 589 ntBASIC16.46■□□□□ 0.23
Col18a1P39061 Gm40761-201ENSMUST00000219123 1153 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col18a1P39061 AC158388.3-202ENSMUST00000225517 775 ntBASIC16.46■□□□□ 0.23
Col18a1P39061 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Col18a1P39061 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col18a1P39061 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col18a1P39061 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col18a1P39061 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col18a1P39061 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col18a1P39061 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
Col18a1P39061 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col18a1P39061 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col18a1P39061 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col18a1P39061 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col18a1P39061 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col18a1P39061 Snrnp25-202ENSMUST00000121182 659 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.22
Col18a1P39061 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC16.46■□□□□ 0.22
Col18a1P39061 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Col18a1P39061 Gm5870-201ENSMUST00000196461 282 ntBASIC16.46■□□□□ 0.22
Col18a1P39061 Gm8574-201ENSMUST00000203207 924 ntBASIC16.46■□□□□ 0.22
Col18a1P39061 Gm29763-201ENSMUST00000205306 616 ntBASIC16.46■□□□□ 0.22
Col18a1P39061 Gm18561-201ENSMUST00000206027 804 ntBASIC16.46■□□□□ 0.22
Col18a1P39061 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC16.46■□□□□ 0.22
Col18a1P39061 AC154361.2-201ENSMUST00000224747 943 ntBASIC16.46■□□□□ 0.22
Col18a1P39061 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col18a1P39061 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col18a1P39061 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col18a1P39061 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col18a1P39061 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col18a1P39061 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Col18a1P39061 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Col18a1P39061 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 Zfp125-201ENSMUST00000079237 2488 ntBASIC16.45■□□□□ 0.22
Col18a1P39061 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC16.45■□□□□ 0.22
Col18a1P39061 Gm7150-201ENSMUST00000122032 981 ntBASIC16.45■□□□□ 0.22
Col18a1P39061 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
Col18a1P39061 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC16.45■□□□□ 0.22
Col18a1P39061 Gm9884-201ENSMUST00000194343 1222 ntBASIC16.45■□□□□ 0.22
Col18a1P39061 Gm45113-201ENSMUST00000207518 165 ntBASIC16.45■□□□□ 0.22
Col18a1P39061 AC093022.5-201ENSMUST00000226841 1079 ntBASIC16.45■□□□□ 0.22
Col18a1P39061 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col18a1P39061 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 79.2 ms