Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 AC134254.1-201ENSMUST00000221362 167 ntBASIC11.84□□□□□ -0.51
Cd40lgP27548 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC11.84□□□□□ -0.51
Cd40lgP27548 AC134335.2-201ENSMUST00000227660 440 ntBASIC11.84□□□□□ -0.51
Cd40lgP27548 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC11.84□□□□□ -0.51
Cd40lgP27548 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Cd40lgP27548 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Cd40lgP27548 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Cd40lgP27548 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC11.84□□□□□ -0.51
Cd40lgP27548 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Cd40lgP27548 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Cd40lgP27548 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC11.84□□□□□ -0.51
Cd40lgP27548 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Cd40lgP27548 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC11.84□□□□□ -0.51
Cd40lgP27548 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cd40lgP27548 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
Cd40lgP27548 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Cd40lgP27548 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
Cd40lgP27548 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
Cd40lgP27548 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC11.83□□□□□ -0.52
Cd40lgP27548 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC11.83□□□□□ -0.52
Cd40lgP27548 Gm12846-201ENSMUST00000120431 1373 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Nudt18-202ENSMUST00000228554 3619 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC11.83□□□□□ -0.52
Cd40lgP27548 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC11.83□□□□□ -0.52
Cd40lgP27548 Gm14350-201ENSMUST00000116642 640 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 Gm12203-201ENSMUST00000118235 598 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 Gm12209-201ENSMUST00000120089 596 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC11.83□□□□□ -0.52
Cd40lgP27548 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC11.83□□□□□ -0.52
Cd40lgP27548 Gm45784-201ENSMUST00000188360 142 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 Gm43438-201ENSMUST00000198133 379 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Gm45841-201ENSMUST00000207700 164 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 AC135669.1-202ENSMUST00000216742 540 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 Gm2824-203ENSMUST00000226189 1228 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 AC125108.1-201ENSMUST00000218986 2330 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Cd40lgP27548 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Ssr1-203ENSMUST00000225246 1825 ntBASIC11.83□□□□□ -0.52
Cd40lgP27548 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC11.83□□□□□ -0.52
Cd40lgP27548 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC11.83□□□□□ -0.52
Cd40lgP27548 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
Cd40lgP27548 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cd40lgP27548 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cd40lgP27548 Gm43273-201ENSMUST00000199649 2594 ntBASIC11.82□□□□□ -0.52
Cd40lgP27548 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cd40lgP27548 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cd40lgP27548 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cd40lgP27548 Nrap-204ENSMUST00000166203 5079 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Cd40lgP27548 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cd40lgP27548 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cd40lgP27548 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cd40lgP27548 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cd40lgP27548 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC11.82□□□□□ -0.52
Cd40lgP27548 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Cd40lgP27548 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC11.82□□□□□ -0.52
Cd40lgP27548 Gm20554-201ENSMUST00000177421 2352 ntBASIC11.82□□□□□ -0.52
Cd40lgP27548 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cd40lgP27548 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Cd40lgP27548 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Cd40lgP27548 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms