Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Gm27627-201ENSMUST00000183644 150 ntBASIC14.91□□□□□ -0.02
Scn11aQ9R053 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Arhgef33-207ENSMUST00000224966 490 ntBASIC14.91□□□□□ -0.02
Scn11aQ9R053 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 AC123619.2-202ENSMUST00000225097 1568 ntBASIC14.91□□□□□ -0.02
Scn11aQ9R053 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Scn11aQ9R053 Gm23949-201ENSMUST00000104027 127 ntBASIC14.9□□□□□ -0.02
Scn11aQ9R053 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Mir219a-1-201ENSMUST00000083621 110 ntBASIC14.9□□□□□ -0.02
Scn11aQ9R053 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Gm5419-201ENSMUST00000119301 527 ntBASIC14.9□□□□□ -0.02
Scn11aQ9R053 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC14.9□□□□□ -0.02
Scn11aQ9R053 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 AY036118-201ENSMUST00000200021 923 ntBASIC14.9□□□□□ -0.02
Scn11aQ9R053 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Scn11aQ9R053 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Scn11aQ9R053 Gm29615-201ENSMUST00000185371 697 ntBASIC14.89□□□□□ -0.03
Scn11aQ9R053 Gm28224-201ENSMUST00000186078 697 ntBASIC14.89□□□□□ -0.03
Scn11aQ9R053 Gm29001-201ENSMUST00000186177 697 ntBASIC14.89□□□□□ -0.03
Scn11aQ9R053 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC14.89□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 74.4 ms