Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Gm21811-201ENSMUST00000096485 930 ntBASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Gm45242-201ENSMUST00000210666 2129 ntBASIC13.09□□□□□ -0.31
Nkx2-4Q9EQM3 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
Nkx2-4Q9EQM3 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
Nkx2-4Q9EQM3 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Nkx2-4Q9EQM3 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Nkx2-4Q9EQM3 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Nkx2-4Q9EQM3 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC13.08□□□□□ -0.31
Nkx2-4Q9EQM3 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Nkx2-4Q9EQM3 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Gm13047-201ENSMUST00000117116 815 ntBASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Gm14921-201ENSMUST00000118643 908 ntBASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Gm28324-201ENSMUST00000187913 264 ntBASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Gm9230-201ENSMUST00000188228 532 ntBASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 AC174797.2-202ENSMUST00000225729 568 ntBASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nkx2-4Q9EQM3 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Gm38355-201ENSMUST00000192514 1570 ntBASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Gm13315-201ENSMUST00000120376 991 ntBASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Gm45550-201ENSMUST00000209380 946 ntBASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 AC133602.1-201ENSMUST00000227510 509 ntBASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Nkx2-4Q9EQM3 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 66.9 ms