Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Snord83b-201ENSMUST00000104546 94 ntBASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Gm7029-201ENSMUST00000173226 450 ntBASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Rab3c-202ENSMUST00000223922 2398 ntBASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 AC123834.1-201ENSMUST00000225346 2043 ntBASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Ddx56Q9D0R4 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Gm26616-202ENSMUST00000195676 3107 ntBASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Gm27194-201ENSMUST00000175753 2936 ntBASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Gm29127-201ENSMUST00000188304 517 ntBASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Ddx56Q9D0R4 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Ddx56Q9D0R4 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.26
Ddx56Q9D0R4 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Ddx56Q9D0R4 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC13.46□□□□□ -0.26
Ddx56Q9D0R4 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Ddx56Q9D0R4 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.26
Ddx56Q9D0R4 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Ddx56Q9D0R4 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Ddx56Q9D0R4 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 AC154262.2-202ENSMUST00000225158 1331 ntBASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Gm4984-201ENSMUST00000115987 360 ntBASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Gm12363-201ENSMUST00000122250 668 ntBASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Gm26927-201ENSMUST00000182385 965 ntBASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Gm38230-201ENSMUST00000193572 1159 ntBASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms