Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm12286-201ENSMUST00000119246 1002 ntBASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm13875-201ENSMUST00000120162 282 ntBASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm7600-201ENSMUST00000209657 785 ntBASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm6992-201ENSMUST00000217973 1607 ntBASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm6210-201ENSMUST00000204734 1942 ntBASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm12380-201ENSMUST00000119012 544 ntBASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm11597-201ENSMUST00000121423 964 ntBASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm14665-201ENSMUST00000122294 557 ntBASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
Ccdc88aQ5SNZ0 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC14.58□□□□□ -0.07
Ccdc88aQ5SNZ0 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Ccdc88aQ5SNZ0 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
Ccdc88aQ5SNZ0 Gm43908-201ENSMUST00000205074 1472 ntBASIC14.58□□□□□ -0.07
Ccdc88aQ5SNZ0 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Ccdc88aQ5SNZ0 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Ccdc88aQ5SNZ0 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Ccdc88aQ5SNZ0 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Ccdc88aQ5SNZ0 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Gm13045-201ENSMUST00000119019 712 ntBASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Gm27552-201ENSMUST00000183351 62 ntBASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Gm27844-201ENSMUST00000183613 62 ntBASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 CU062626.3-201ENSMUST00000225522 1411 ntBASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ccdc88aQ5SNZ0 Gm45779-201ENSMUST00000212189 4064 ntBASIC14.57□□□□□ -0.08
Ccdc88aQ5SNZ0 Zkscan3-207ENSMUST00000223831 2101 ntBASIC14.57□□□□□ -0.08
Ccdc88aQ5SNZ0 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ccdc88aQ5SNZ0 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ccdc88aQ5SNZ0 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
Ccdc88aQ5SNZ0 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Ccdc88aQ5SNZ0 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ccdc88aQ5SNZ0 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC14.57□□□□□ -0.08
Ccdc88aQ5SNZ0 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ccdc88aQ5SNZ0 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Ccdc88aQ5SNZ0 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC14.57□□□□□ -0.08
Ccdc88aQ5SNZ0 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms