Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Gm43463-201ENSMUST00000195967 1803 ntBASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Usp39Q3TIX9 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 AC153366.2-201ENSMUST00000219461 1984 ntBASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Gm20633-201ENSMUST00000176742 2831 ntBASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Gm14350-201ENSMUST00000116642 640 ntBASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Gm8835-201ENSMUST00000173096 1169 ntBASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Mir6420-201ENSMUST00000185032 102 ntBASIC12.42□□□□□ -0.42
Usp39Q3TIX9 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Gm44094-201ENSMUST00000204703 2030 ntBASIC12.42□□□□□ -0.42
Usp39Q3TIX9 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usp39Q3TIX9 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Gm44414-201ENSMUST00000203660 2109 ntBASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usp39Q3TIX9 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Usp39Q3TIX9 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms