Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sox9Q04887 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sox9Q04887 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Sox9Q04887 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
Sox9Q04887 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC13.2□□□□□ -0.3
Sox9Q04887 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Sox9Q04887 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Sox9Q04887 Gm8492-201ENSMUST00000182375 987 ntBASIC13.2□□□□□ -0.3
Sox9Q04887 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC13.2□□□□□ -0.3
Sox9Q04887 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.2□□□□□ -0.3
Sox9Q04887 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Sox9Q04887 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Gm6992-201ENSMUST00000217973 1607 ntBASIC13.2□□□□□ -0.3
Sox9Q04887 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Sox9Q04887 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Gm43056-201ENSMUST00000197865 2791 ntBASIC13.2□□□□□ -0.3
Sox9Q04887 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC13.2□□□□□ -0.3
Sox9Q04887 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sox9Q04887 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Sox9Q04887 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC13.19□□□□□ -0.3
Sox9Q04887 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Sox9Q04887 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC13.19□□□□□ -0.3
Sox9Q04887 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC13.19□□□□□ -0.3
Sox9Q04887 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC13.19□□□□□ -0.3
Sox9Q04887 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Gm14999-201ENSMUST00000121039 624 ntBASIC13.19□□□□□ -0.3
Sox9Q04887 Gm6161-201ENSMUST00000121942 1102 ntBASIC13.19□□□□□ -0.3
Sox9Q04887 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC13.19□□□□□ -0.3
Sox9Q04887 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC13.19□□□□□ -0.3
Sox9Q04887 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC13.19□□□□□ -0.3
Sox9Q04887 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Sox9Q04887 Gm6153-201ENSMUST00000172004 1058 ntBASIC13.19□□□□□ -0.3
Sox9Q04887 Gm25072-201ENSMUST00000175233 235 ntBASIC13.19□□□□□ -0.3
Sox9Q04887 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Sox9Q04887 Gm3671-201ENSMUST00000182463 1007 ntBASIC13.19□□□□□ -0.3
Sox9Q04887 Mir6546-201ENSMUST00000184460 62 ntBASIC13.19□□□□□ -0.3
Sox9Q04887 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC13.19□□□□□ -0.3
Sox9Q04887 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC13.19□□□□□ -0.3
Sox9Q04887 Gm5641-202ENSMUST00000198699 1080 ntBASIC13.19□□□□□ -0.3
Sox9Q04887 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Sox9Q04887 CT030637.1-201ENSMUST00000228016 669 ntBASIC13.19□□□□□ -0.3
Sox9Q04887 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Gm9873-201ENSMUST00000063891 1097 ntBASIC13.19□□□□□ -0.3
Sox9Q04887 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Sox9Q04887 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Sox9Q04887 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox9Q04887 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Sox9Q04887 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms