Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Msx3P70354 Gm8617-201ENSMUST00000118796 2222 ntBASIC13.16□□□□□ -0.3
Msx3P70354 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC13.16□□□□□ -0.3
Msx3P70354 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
Msx3P70354 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC13.16□□□□□ -0.3
Msx3P70354 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC13.16□□□□□ -0.3
Msx3P70354 Gm17208-201ENSMUST00000168388 535 ntBASIC13.16□□□□□ -0.3
Msx3P70354 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 H2-Pa-201ENSMUST00000182803 626 ntBASIC13.16□□□□□ -0.3
Msx3P70354 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC13.16□□□□□ -0.3
Msx3P70354 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC13.16□□□□□ -0.3
Msx3P70354 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC13.16□□□□□ -0.3
Msx3P70354 AC155237.1-201ENSMUST00000226196 1279 ntBASIC13.16□□□□□ -0.3
Msx3P70354 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Msx3P70354 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 AC153366.2-201ENSMUST00000219461 1984 ntBASIC13.16□□□□□ -0.3
Msx3P70354 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx3P70354 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Msx3P70354 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.15□□□□□ -0.3
Msx3P70354 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Msx3P70354 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Msx3P70354 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Gm43858-201ENSMUST00000199418 1778 ntBASIC13.15□□□□□ -0.3
Msx3P70354 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Msx3P70354 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Gm43417-201ENSMUST00000201586 5207 ntBASIC13.15□□□□□ -0.3
Msx3P70354 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
Msx3P70354 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC13.15□□□□□ -0.3
Msx3P70354 Gm13369-201ENSMUST00000119442 987 ntBASIC13.15□□□□□ -0.3
Msx3P70354 Gm12138-201ENSMUST00000122180 951 ntBASIC13.15□□□□□ -0.3
Msx3P70354 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC13.15□□□□□ -0.3
Msx3P70354 Gm8652-201ENSMUST00000181363 964 ntBASIC13.15□□□□□ -0.3
Msx3P70354 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC13.15□□□□□ -0.3
Msx3P70354 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC13.15□□□□□ -0.3
Msx3P70354 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Msx3P70354 Gm45059-201ENSMUST00000205558 1077 ntBASIC13.15□□□□□ -0.3
Msx3P70354 Gm7067-201ENSMUST00000207698 1249 ntBASIC13.15□□□□□ -0.3
Msx3P70354 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Gm10146-201ENSMUST00000072739 309 ntBASIC13.15□□□□□ -0.3
Msx3P70354 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC13.15□□□□□ -0.3
Msx3P70354 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Msx3P70354 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx3P70354 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC13.15□□□□□ -0.31
Msx3P70354 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Msx3P70354 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx3P70354 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx3P70354 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC13.14□□□□□ -0.31
Msx3P70354 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC13.14□□□□□ -0.31
Msx3P70354 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msx3P70354 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx3P70354 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
Msx3P70354 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx3P70354 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx3P70354 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx3P70354 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx3P70354 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Msx3P70354 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msx3P70354 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms