Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HttP42859 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC13.21□□□□□ -0.3
HttP42859 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HttP42859 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HttP42859 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC13.2□□□□□ -0.3
HttP42859 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC13.2□□□□□ -0.3
HttP42859 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC13.2□□□□□ -0.3
HttP42859 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HttP42859 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Gm11942-201ENSMUST00000180255 345 ntBASIC13.2□□□□□ -0.3
HttP42859 Gm28529-201ENSMUST00000186159 387 ntTSL 3 BASIC13.2□□□□□ -0.3
HttP42859 Gm9797-202ENSMUST00000218003 294 ntBASIC13.2□□□□□ -0.3
HttP42859 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC13.2□□□□□ -0.3
HttP42859 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Gm15459-201ENSMUST00000117405 1941 ntBASIC13.2□□□□□ -0.3
HttP42859 Gm8355-201ENSMUST00000177767 1941 ntBASIC13.2□□□□□ -0.3
HttP42859 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HttP42859 Rpl41-201ENSMUST00000176010 582 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Rpl41-204ENSMUST00000176906 509 ntAPPRIS ALT2 TSL 3 BASIC13.2□□□□□ -0.3
HttP42859 Gm38228-201ENSMUST00000193169 1293 ntBASIC13.2□□□□□ -0.3
HttP42859 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Gm23680-201ENSMUST00000083162 164 ntBASIC13.2□□□□□ -0.3
HttP42859 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HttP42859 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HttP42859 Mrpl24-204ENSMUST00000121920 1115 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Gm18801-201ENSMUST00000186616 536 ntBASIC13.19□□□□□ -0.3
HttP42859 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
HttP42859 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HttP42859 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HttP42859 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC13.19□□□□□ -0.3
HttP42859 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC13.19□□□□□ -0.3
HttP42859 Gm28651-201ENSMUST00000185335 644 ntTSL 3 BASIC13.19□□□□□ -0.3
HttP42859 Gm28686-201ENSMUST00000187404 609 ntBASIC13.19□□□□□ -0.3
HttP42859 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HttP42859 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC13.19□□□□□ -0.3
HttP42859 CT009536.2-201ENSMUST00000225370 665 ntBASIC13.19□□□□□ -0.3
HttP42859 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HttP42859 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC13.19□□□□□ -0.3
HttP42859 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
HttP42859 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HttP42859 AC166836.1-201ENSMUST00000219933 1795 ntBASIC13.19□□□□□ -0.3
HttP42859 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Gm5700-201ENSMUST00000191483 989 ntBASIC13.19□□□□□ -0.3
HttP42859 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC13.19□□□□□ -0.3
HttP42859 Gm44958-201ENSMUST00000203734 736 ntBASIC13.19□□□□□ -0.3
HttP42859 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HttP42859 AC134537.1-201ENSMUST00000219205 265 ntBASIC13.19□□□□□ -0.3
HttP42859 AC154759.1-201ENSMUST00000224137 1159 ntBASIC13.19□□□□□ -0.3
HttP42859 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HttP42859 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HttP42859 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HttP42859 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HttP42859 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HttP42859 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC13.18□□□□□ -0.3
HttP42859 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC13.18□□□□□ -0.3
HttP42859 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC13.18□□□□□ -0.3
HttP42859 Gm11560-201ENSMUST00000117567 948 ntBASIC13.18□□□□□ -0.3
HttP42859 Gm8815-201ENSMUST00000173809 620 ntBASIC13.18□□□□□ -0.3
HttP42859 Gm8756-201ENSMUST00000183250 929 ntBASIC13.18□□□□□ -0.3
HttP42859 Gm3726-201ENSMUST00000203110 785 ntBASIC13.18□□□□□ -0.3
HttP42859 BC106175-201ENSMUST00000218578 695 ntTSL 5 BASIC13.18□□□□□ -0.3
HttP42859 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC13.18□□□□□ -0.3
HttP42859 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HttP42859 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC13.18□□□□□ -0.3
HttP42859 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HttP42859 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms