Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC15.11■□□□□ 0.01
Col3a1P08121 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC15.11■□□□□ 0.01
Col3a1P08121 Gm13142-201ENSMUST00000117213 1453 ntBASIC15.11■□□□□ 0.01
Col3a1P08121 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Col3a1P08121 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC15.1■□□□□ 0.01
Col3a1P08121 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Col3a1P08121 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC15.1■□□□□ 0.01
Col3a1P08121 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Col3a1P08121 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC15.1■□□□□ 0.01
Col3a1P08121 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Gm27552-201ENSMUST00000183351 62 ntBASIC15.1■□□□□ 0.01
Col3a1P08121 Gm27844-201ENSMUST00000183613 62 ntBASIC15.1■□□□□ 0.01
Col3a1P08121 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC15.1■□□□□ 0.01
Col3a1P08121 AY036118-201ENSMUST00000200021 923 ntBASIC15.1■□□□□ 0.01
Col3a1P08121 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC15.1■□□□□ 0.01
Col3a1P08121 CT025694.1-201ENSMUST00000226188 934 ntBASIC15.1■□□□□ 0.01
Col3a1P08121 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC15.1■□□□□ 0.01
Col3a1P08121 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Col3a1P08121 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Col3a1P08121 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Col3a1P08121 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC15.1■□□□□ 0.01
Col3a1P08121 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Col3a1P08121 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC15.1■□□□□ 0.01
Col3a1P08121 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col3a1P08121 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC15.09■□□□□ 0.01
Col3a1P08121 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC15.09■□□□□ 0.01
Col3a1P08121 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Col3a1P08121 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
Col3a1P08121 Gm12286-201ENSMUST00000119246 1002 ntBASIC15.09■□□□□ 0.01
Col3a1P08121 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC15.09■□□□□ 0.01
Col3a1P08121 Zkscan3-207ENSMUST00000223831 2101 ntBASIC15.09■□□□□ 0.01
Col3a1P08121 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 CU062626.3-201ENSMUST00000225522 1411 ntBASIC15.09■□□□□ 0.01
Col3a1P08121 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC15.09■□□□□ 0.01
Col3a1P08121 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Col3a1P08121 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 AC241621.2-201ENSMUST00000223991 2151 ntBASIC15.09■□□□□ 0.01
Col3a1P08121 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col3a1P08121 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col3a1P08121 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col3a1P08121 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
Col3a1P08121 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col3a1P08121 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC15.08■□□□□ 0.01
Col3a1P08121 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col3a1P08121 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC15.08■□□□□ 0.01
Col3a1P08121 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC15.08■□□□□ 0.01
Col3a1P08121 Gm17040-202ENSMUST00000170597 889 ntBASIC15.08■□□□□ 0.01
Col3a1P08121 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC15.08■□□□□ 0.01
Col3a1P08121 Gm42997-202ENSMUST00000200321 985 ntBASIC15.08■□□□□ 0.01
Col3a1P08121 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col3a1P08121 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col3a1P08121 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col3a1P08121 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC15.08■□□□□ 0.01
Col3a1P08121 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col3a1P08121 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Col3a1P08121 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC15.08■□□□□ 0.01
Col3a1P08121 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Col3a1P08121 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col3a1P08121 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 69.7 ms