Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Gm11618-201ENSMUST00000117946 267 ntBASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Auts2-212ENSMUST00000178555 309 ntBASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Gm27701-201ENSMUST00000184498 110 ntBASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 AC162801.1-201ENSMUST00000220612 198 ntBASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Gm8598-201ENSMUST00000221184 836 ntBASIC12.3□□□□□ -0.44
Lsm1Q8VC85 AC169036.1-201ENSMUST00000227994 296 ntBASIC12.3□□□□□ -0.44
Lsm1Q8VC85 AC158982.1-201ENSMUST00000228377 901 ntBASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 CT009713.10-201ENSMUST00000225013 1986 ntBASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lsm1Q8VC85 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Gm45743-201ENSMUST00000212701 2795 ntBASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Gm13612-201ENSMUST00000119276 390 ntBASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Gm5626-201ENSMUST00000222151 1058 ntBASIC12.29□□□□□ -0.44
Lsm1Q8VC85 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Rab3c-202ENSMUST00000223922 2398 ntBASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lsm1Q8VC85 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Gm43858-201ENSMUST00000199418 1778 ntBASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Lsm1Q8VC85 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms