Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Gm37466-201ENSMUST00000195692 652 ntBASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Gm27194-201ENSMUST00000175753 2936 ntBASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 AC155298.2-201ENSMUST00000225485 6226 ntBASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Gm43045-201ENSMUST00000198725 2095 ntBASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Gm38385-201ENSMUST00000194454 2351 ntBASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Gm11618-201ENSMUST00000117946 267 ntBASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Gm9061-201ENSMUST00000182707 1006 ntBASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Gm28693-202ENSMUST00000190758 331 ntBASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Gm42627-201ENSMUST00000197347 224 ntBASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Gm43758-201ENSMUST00000199500 367 ntBASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Zkscan3-207ENSMUST00000223831 2101 ntBASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ushbp1Q8R370 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Gm15808-201ENSMUST00000119046 604 ntBASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Gm18935-201ENSMUST00000212692 664 ntBASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 AC154305.4-201ENSMUST00000224520 614 ntBASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Gm10268-201ENSMUST00000085340 555 ntBASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ushbp1Q8R370 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Gm38049-201ENSMUST00000195698 1372 ntBASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms