Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trub1Q8C0D0 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trub1Q8C0D0 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trub1Q8C0D0 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trub1Q8C0D0 Gm45266-201ENSMUST00000210111 2173 ntBASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC13.22□□□□□ -0.29
Trub1Q8C0D0 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Gm43858-201ENSMUST00000199418 1778 ntBASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Gm44775-201ENSMUST00000207266 1456 ntBASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trub1Q8C0D0 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Gm20633-201ENSMUST00000176742 2831 ntBASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Gm12390-201ENSMUST00000117897 397 ntBASIC13.21□□□□□ -0.29
Trub1Q8C0D0 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.21□□□□□ -0.29
Trub1Q8C0D0 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trub1Q8C0D0 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trub1Q8C0D0 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trub1Q8C0D0 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
Trub1Q8C0D0 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trub1Q8C0D0 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC13.21□□□□□ -0.3
Trub1Q8C0D0 Gm44942-201ENSMUST00000096093 2072 ntBASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Gm26927-201ENSMUST00000182385 965 ntBASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Gm27682-201ENSMUST00000183930 110 ntBASIC13.2□□□□□ -0.3
Trub1Q8C0D0 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trub1Q8C0D0 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms