Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Mir1247-201ENSMUST00000116706 82 ntBASIC15.1■□□□□ 0.01
Trim56Q80VI1 Gm8801-201ENSMUST00000173255 1064 ntBASIC15.1■□□□□ 0.01
Trim56Q80VI1 Mospd4-201ENSMUST00000180618 576 ntBASIC15.1■□□□□ 0.01
Trim56Q80VI1 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Gm6334-201ENSMUST00000207083 228 ntBASIC15.1■□□□□ 0.01
Trim56Q80VI1 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Gm18935-201ENSMUST00000212692 664 ntBASIC15.1■□□□□ 0.01
Trim56Q80VI1 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Gm7046-201ENSMUST00000221351 977 ntBASIC15.1■□□□□ 0.01
Trim56Q80VI1 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Trim56Q80VI1 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC15.1■□□□□ 0.01
Trim56Q80VI1 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim56Q80VI1 AC116503.1-201ENSMUST00000215445 2192 ntBASIC15.09■□□□□ 0.01
Trim56Q80VI1 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Gm15370-201ENSMUST00000117158 253 ntBASIC15.09■□□□□ 0.01
Trim56Q80VI1 Gm13492-201ENSMUST00000119772 665 ntBASIC15.09■□□□□ 0.01
Trim56Q80VI1 Gm13875-201ENSMUST00000120162 282 ntBASIC15.09■□□□□ 0.01
Trim56Q80VI1 Gm13297-201ENSMUST00000120205 934 ntBASIC15.09■□□□□ 0.01
Trim56Q80VI1 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
Trim56Q80VI1 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Trim56Q80VI1 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Gm7789-202ENSMUST00000211273 1400 ntBASIC15.09■□□□□ 0.01
Trim56Q80VI1 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim56Q80VI1 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC15.08■□□□□ 0.01
Trim56Q80VI1 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC15.08■□□□□ 0.01
Trim56Q80VI1 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim56Q80VI1 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Trim56Q80VI1 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim56Q80VI1 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim56Q80VI1 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim56Q80VI1 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim56Q80VI1 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim56Q80VI1 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC15.08■□□□□ 0.01
Trim56Q80VI1 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
Trim56Q80VI1 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim56Q80VI1 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Trim56Q80VI1 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC15.08■□□□□ 0
Trim56Q80VI1 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Gm5638-201ENSMUST00000118618 1258 ntBASIC15.08■□□□□ 0
Trim56Q80VI1 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC15.08■□□□□ 0
Trim56Q80VI1 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC15.08■□□□□ 0
Trim56Q80VI1 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC15.08■□□□□ 0
Trim56Q80VI1 AC154305.4-201ENSMUST00000224520 614 ntBASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 91.2 ms