Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm45784-201ENSMUST00000188360 142 ntBASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Gm7498-201ENSMUST00000203282 1084 ntBASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 AC073947.1-201ENSMUST00000216991 649 ntBASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sh3rf1Q69ZI1 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sh3rf1Q69ZI1 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sh3rf1Q69ZI1 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sh3rf1Q69ZI1 Gm13722-201ENSMUST00000117964 3066 ntBASIC13.02□□□□□ -0.32
Sh3rf1Q69ZI1 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sh3rf1Q69ZI1 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC13.02□□□□□ -0.32
Sh3rf1Q69ZI1 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sh3rf1Q69ZI1 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sh3rf1Q69ZI1 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sh3rf1Q69ZI1 AC123834.1-201ENSMUST00000225346 2043 ntBASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Cisd3-201ENSMUST00000107583 737 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Gm16342-201ENSMUST00000124025 1025 ntBASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Gm8062-201ENSMUST00000139696 444 ntBASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Gm38671-201ENSMUST00000200573 130 ntBASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 AC140451.2-201ENSMUST00000228030 664 ntBASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 AC161252.3-201ENSMUST00000225465 1549 ntBASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Nupl1-206ENSMUST00000225111 2936 ntBASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sh3rf1Q69ZI1 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Trav4d-2-201ENSMUST00000120914 335 ntBASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Gm9299-201ENSMUST00000206392 1140 ntBASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Gm6983-201ENSMUST00000214912 628 ntBASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Gm9200-201ENSMUST00000118513 1354 ntBASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Sh3rf1Q69ZI1 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sh3rf1Q69ZI1 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sh3rf1Q69ZI1 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms