Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Gm15547-201ENSMUST00000122152 333 ntBASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim41Q5NCC3 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC22.23■■□□□ 1.15
Trim41Q5NCC3 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim41Q5NCC3 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Gm25043-201ENSMUST00000158604 212 ntBASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Gm37905-201ENSMUST00000195310 341 ntBASIC22.22■■□□□ 1.15
Trim41Q5NCC3 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 AC113031.8-201ENSMUST00000227856 631 ntBASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Ntng1-201ENSMUST00000051253 327 ntBASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
Trim41Q5NCC3 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC22.21■■□□□ 1.15
Trim41Q5NCC3 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Gm28324-201ENSMUST00000187913 264 ntBASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 AC154634.3-201ENSMUST00000224589 736 ntBASIC22.21■■□□□ 1.15
Trim41Q5NCC3 AC140375.1-201ENSMUST00000225421 694 ntBASIC22.21■■□□□ 1.15
Trim41Q5NCC3 AC108416.1-202ENSMUST00000228927 1201 ntBASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim41Q5NCC3 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 75.5 ms