Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Gm43075-201ENSMUST00000198613 3905 ntBASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gm17837-201ENSMUST00000186435 985 ntBASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gm18905-201ENSMUST00000205454 928 ntBASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gm6888-201ENSMUST00000221983 706 ntBASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 AC134335.2-201ENSMUST00000227660 440 ntBASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gm8617-201ENSMUST00000118796 2222 ntBASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim40Q3UWA4 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim40Q3UWA4 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Gm22175-201ENSMUST00000175007 78 ntBASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Gm27680-201ENSMUST00000184192 160 ntBASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Rbfox2-208ENSMUST00000227930 1218 ntBASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Gm24447-201ENSMUST00000083977 338 ntBASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 77.9 ms