Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Gm8099-201ENSMUST00000200510 742 ntBASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 AC126253.1-201ENSMUST00000227974 824 ntBASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Gm8706-201ENSMUST00000197372 1491 ntBASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Gm12846-201ENSMUST00000120431 1373 ntBASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Gm8565-201ENSMUST00000183259 1014 ntBASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
Upf3bQ3ULL6 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Gm38355-201ENSMUST00000192514 1570 ntBASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Gm13813-201ENSMUST00000120998 787 ntBASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Gm23363-201ENSMUST00000175024 79 ntBASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Gm18916-201ENSMUST00000198264 1246 ntBASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Gm44772-201ENSMUST00000207623 1191 ntBASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Mir339-201ENSMUST00000083659 96 ntBASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Upf3bQ3ULL6 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 61.2 ms