Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 1810013D15Rik-201ENSMUST00000029827 300 ntTSL 5 BASIC19.24■□□□□ 0.67
Col17a1Q07563 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col17a1Q07563 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Col17a1Q07563 Tnnt3-202ENSMUST00000078497 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col17a1Q07563 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Col17a1Q07563 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col17a1Q07563 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col17a1Q07563 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC19.24■□□□□ 0.67
Col17a1Q07563 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Col17a1Q07563 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col17a1Q07563 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col17a1Q07563 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col17a1Q07563 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Col17a1Q07563 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col17a1Q07563 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col17a1Q07563 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col17a1Q07563 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Col17a1Q07563 Gm13981-201ENSMUST00000122360 447 ntBASIC19.23■□□□□ 0.67
Col17a1Q07563 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC19.23■□□□□ 0.67
Col17a1Q07563 Rhox12-203ENSMUST00000183737 761 ntTSL 3 BASIC19.23■□□□□ 0.67
Col17a1Q07563 Gm17190-202ENSMUST00000185178 1074 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Col17a1Q07563 Gsdmcl2-202ENSMUST00000185391 796 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col17a1Q07563 Gm43547-201ENSMUST00000197729 328 ntBASIC19.23■□□□□ 0.67
Col17a1Q07563 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col17a1Q07563 Gm45469-201ENSMUST00000210468 854 ntTSL 3 BASIC19.23■□□□□ 0.67
Col17a1Q07563 Gm45812-201ENSMUST00000212199 192 ntTSL 5 BASIC19.23■□□□□ 0.67
Col17a1Q07563 AC114645.1-201ENSMUST00000215831 187 ntBASIC19.23■□□□□ 0.67
Col17a1Q07563 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col17a1Q07563 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC19.23■□□□□ 0.67
Col17a1Q07563 Cast-212ENSMUST00000223309 1529 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col17a1Q07563 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Col17a1Q07563 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col17a1Q07563 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col17a1Q07563 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col17a1Q07563 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col17a1Q07563 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col17a1Q07563 Gm12179-201ENSMUST00000118344 1272 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm15707-201ENSMUST00000118804 996 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm12461-201ENSMUST00000120231 1239 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 AA623943-201ENSMUST00000121794 354 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 C130080G10Rik-204ENSMUST00000155185 954 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm27956-201ENSMUST00000175604 260 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm8384-201ENSMUST00000190905 704 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm17936-201ENSMUST00000199413 988 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm30731-201ENSMUST00000203909 825 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm18561-201ENSMUST00000206027 804 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
Col17a1Q07563 Cryab-205ENSMUST00000216755 836 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 AC152169.1-201ENSMUST00000223901 701 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 AC129975.1-201ENSMUST00000224816 592 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 AC169511.1-201ENSMUST00000227639 995 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm5705-201ENSMUST00000066241 711 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm6655-201ENSMUST00000201932 1309 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
Col17a1Q07563 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm21759-201ENSMUST00000178345 1828 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC19.22■□□□□ 0.67
Col17a1Q07563 Dppa3-ps-201ENSMUST00000116499 451 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Spata3-205ENSMUST00000130504 1100 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm34379-201ENSMUST00000195036 290 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 4930573C15Rik-201ENSMUST00000197707 777 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col17a1Q07563 Gm18256-201ENSMUST00000209087 907 ntBASIC19.22■□□□□ 0.67
Col17a1Q07563 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Col17a1Q07563 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Col17a1Q07563 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC19.21■□□□□ 0.67
Col17a1Q07563 Gm44152-201ENSMUST00000205007 1691 ntBASIC19.21■□□□□ 0.67
Col17a1Q07563 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC19.21■□□□□ 0.67
Col17a1Q07563 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC19.21■□□□□ 0.67
Col17a1Q07563 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Col17a1Q07563 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Col17a1Q07563 Etv1-204ENSMUST00000160701 1578 ntTSL 5 BASIC19.21■□□□□ 0.67
Col17a1Q07563 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col17a1Q07563 Gm13192-201ENSMUST00000101199 208 ntBASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms