Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC14.83□□□□□ -0.03
Col1a1P11087 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Col1a1P11087 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Col1a1P11087 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Col1a1P11087 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.04
Col1a1P11087 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col1a1P11087 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 Gm23119-201ENSMUST00000158610 140 ntBASIC14.82□□□□□ -0.04
Col1a1P11087 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC14.82□□□□□ -0.04
Col1a1P11087 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC14.82□□□□□ -0.04
Col1a1P11087 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC14.82□□□□□ -0.04
Col1a1P11087 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC14.82□□□□□ -0.04
Col1a1P11087 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC14.82□□□□□ -0.04
Col1a1P11087 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Col1a1P11087 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
Col1a1P11087 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC14.82□□□□□ -0.04
Col1a1P11087 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Col1a1P11087 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC14.82□□□□□ -0.04
Col1a1P11087 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
Col1a1P11087 Ighv4-2-201ENSMUST00000192975 362 ntBASIC14.82□□□□□ -0.04
Col1a1P11087 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
Col1a1P11087 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC14.82□□□□□ -0.04
Col1a1P11087 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col1a1P11087 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Col1a1P11087 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Col1a1P11087 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC14.81□□□□□ -0.04
Col1a1P11087 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC14.81□□□□□ -0.04
Col1a1P11087 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Col1a1P11087 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC14.81□□□□□ -0.04
Col1a1P11087 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Gm13142-201ENSMUST00000117213 1453 ntBASIC14.81□□□□□ -0.04
Col1a1P11087 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col1a1P11087 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC14.81□□□□□ -0.04
Col1a1P11087 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC14.81□□□□□ -0.04
Col1a1P11087 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC14.81□□□□□ -0.04
Col1a1P11087 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
Col1a1P11087 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Col1a1P11087 Gm5778-201ENSMUST00000171003 1072 ntBASIC14.81□□□□□ -0.04
Col1a1P11087 Mir6958-201ENSMUST00000184207 73 ntBASIC14.81□□□□□ -0.04
Col1a1P11087 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms