Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mllt3-201ENSMUST00000078090 6069 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Slit2-202ENSMUST00000170109 7758 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Slit2-217ENSMUST00000174421 7785 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC10.59□□□□□ -0.71
Hmgb3O54879 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
Hmgb3O54879 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.71
Hmgb3O54879 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Dusp16-201ENSMUST00000100857 5104 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Gm13365-201ENSMUST00000121188 973 ntBASIC10.59□□□□□ -0.71
Hmgb3O54879 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC10.59□□□□□ -0.71
Hmgb3O54879 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC10.59□□□□□ -0.71
Hmgb3O54879 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC10.59□□□□□ -0.71
Hmgb3O54879 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
Hmgb3O54879 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
Hmgb3O54879 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Adra1a-206ENSMUST00000225182 2337 ntBASIC10.59□□□□□ -0.71
Hmgb3O54879 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Tro-203ENSMUST00000112709 6610 ntAPPRIS P3 TSL 5 BASIC10.59□□□□□ -0.71
Hmgb3O54879 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC10.59□□□□□ -0.71
Hmgb3O54879 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC10.59□□□□□ -0.71
Hmgb3O54879 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC10.59□□□□□ -0.71
Hmgb3O54879 Gm45266-201ENSMUST00000210111 2173 ntBASIC10.59□□□□□ -0.71
Hmgb3O54879 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 AC168058.1-201ENSMUST00000219521 2282 ntBASIC10.59□□□□□ -0.71
Hmgb3O54879 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
Hmgb3O54879 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Hmgb3O54879 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC10.58□□□□□ -0.71
Hmgb3O54879 Abcc3-201ENSMUST00000021231 4999 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Gm19817-201ENSMUST00000199764 2132 ntBASIC10.58□□□□□ -0.72
Hmgb3O54879 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Gm7104-201ENSMUST00000179741 2532 ntBASIC10.58□□□□□ -0.72
Hmgb3O54879 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Cacna1c-210ENSMUST00000187474 6911 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Astn1-205ENSMUST00000193042 7248 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Gm8798-201ENSMUST00000211877 1661 ntBASIC10.58□□□□□ -0.72
Hmgb3O54879 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
Hmgb3O54879 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
Hmgb3O54879 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 H2af-ps-201ENSMUST00000119066 295 ntBASIC10.58□□□□□ -0.72
Hmgb3O54879 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC10.58□□□□□ -0.72
Hmgb3O54879 Gm25948-201ENSMUST00000175334 112 ntBASIC10.58□□□□□ -0.72
Hmgb3O54879 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC10.58□□□□□ -0.72
Hmgb3O54879 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC10.58□□□□□ -0.72
Hmgb3O54879 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
Hmgb3O54879 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
Hmgb3O54879 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 AC123834.1-201ENSMUST00000225346 2043 ntBASIC10.58□□□□□ -0.72
Hmgb3O54879 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC10.58□□□□□ -0.72
Hmgb3O54879 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC10.58□□□□□ -0.72
Hmgb3O54879 Tsc1-204ENSMUST00000113870 7595 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC10.58□□□□□ -0.72
Hmgb3O54879 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 116.3 ms