Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Msh4Q99MT2 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Msh4Q99MT2 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Msh4Q99MT2 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Msh4Q99MT2 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Msh4Q99MT2 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Msh4Q99MT2 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Msh4Q99MT2 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Msh4Q99MT2 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm45643-201ENSMUST00000211364 1484 ntBASIC12.53□□□□□ -0.4
Msh4Q99MT2 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm14350-201ENSMUST00000116642 640 ntBASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm13226-201ENSMUST00000117838 404 ntBASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm12203-201ENSMUST00000118235 598 ntBASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm12209-201ENSMUST00000120089 596 ntBASIC12.53□□□□□ -0.4
Msh4Q99MT2 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC12.53□□□□□ -0.4
Msh4Q99MT2 AC122459.1-201ENSMUST00000228373 885 ntBASIC12.53□□□□□ -0.4
Msh4Q99MT2 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm16372-201ENSMUST00000073088 450 ntBASIC12.53□□□□□ -0.4
Msh4Q99MT2 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm28323-201ENSMUST00000186817 2499 ntBASIC12.53□□□□□ -0.4
Msh4Q99MT2 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm27196-201ENSMUST00000184787 2582 ntBASIC12.53□□□□□ -0.4
Msh4Q99MT2 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Msh4Q99MT2 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Msh4Q99MT2 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Msh4Q99MT2 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC12.52□□□□□ -0.4
Msh4Q99MT2 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Msh4Q99MT2 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Msh4Q99MT2 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Msh4Q99MT2 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Msh4Q99MT2 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Msh4Q99MT2 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC12.52□□□□□ -0.4
Msh4Q99MT2 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Msh4Q99MT2 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Msh4Q99MT2 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Gm6447-201ENSMUST00000118905 835 ntBASIC12.52□□□□□ -0.41
Msh4Q99MT2 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.52□□□□□ -0.41
Msh4Q99MT2 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Msh4Q99MT2 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC12.52□□□□□ -0.41
Msh4Q99MT2 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12.52□□□□□ -0.41
Msh4Q99MT2 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
Msh4Q99MT2 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC12.52□□□□□ -0.41
Msh4Q99MT2 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms