Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Gm8798-201ENSMUST00000211877 1661 ntBASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Adra1a-206ENSMUST00000225182 2337 ntBASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sh3rf1Q69ZI1 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm37269-201ENSMUST00000193906 1891 ntBASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm43051-201ENSMUST00000201096 2678 ntBASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Mup-ps23-201ENSMUST00000118063 630 ntBASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm27847-201ENSMUST00000183711 107 ntBASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm27375-201ENSMUST00000183799 107 ntBASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm6091-201ENSMUST00000098307 165 ntBASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Zscan30-202ENSMUST00000224144 1458 ntBASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sh3rf1Q69ZI1 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Gm11814-201ENSMUST00000119515 929 ntBASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Gm14730-201ENSMUST00000122378 1045 ntBASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Crls1-204ENSMUST00000124836 1267 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sh3rf1Q69ZI1 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 70.1 ms