Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdh11P55288 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdh11P55288 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdh11P55288 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Cdh11P55288 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Cdh11P55288 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cdh11P55288 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
Cdh11P55288 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC11.73□□□□□ -0.53
Cdh11P55288 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Cdh11P55288 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Cdh11P55288 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC11.73□□□□□ -0.53
Cdh11P55288 Gm5466-201ENSMUST00000119395 1890 ntBASIC11.73□□□□□ -0.53
Cdh11P55288 Gm13829-201ENSMUST00000119600 138 ntBASIC11.73□□□□□ -0.53
Cdh11P55288 Gm13859-201ENSMUST00000119936 1423 ntBASIC11.73□□□□□ -0.53
Cdh11P55288 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Cdh11P55288 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC11.73□□□□□ -0.53
Cdh11P55288 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Gm26464-201ENSMUST00000157094 305 ntBASIC11.73□□□□□ -0.53
Cdh11P55288 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
Cdh11P55288 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC11.73□□□□□ -0.53
Cdh11P55288 Gm17150-201ENSMUST00000165577 381 ntBASIC11.73□□□□□ -0.53
Cdh11P55288 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Gm27839-201ENSMUST00000184242 106 ntBASIC11.73□□□□□ -0.53
Cdh11P55288 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Gm37472-201ENSMUST00000192342 4052 ntBASIC11.73□□□□□ -0.53
Cdh11P55288 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 AC161252.3-201ENSMUST00000225465 1549 ntBASIC11.73□□□□□ -0.53
Cdh11P55288 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC11.73□□□□□ -0.53
Cdh11P55288 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Cdh11P55288 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
Cdh11P55288 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC11.73□□□□□ -0.53
Cdh11P55288 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdh11P55288 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Cdh11P55288 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Cdh11P55288 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
Cdh11P55288 Gm21038-201ENSMUST00000222205 1383 ntBASIC11.72□□□□□ -0.53
Cdh11P55288 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC11.72□□□□□ -0.53
Cdh11P55288 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Cdh11P55288 Gm6244-201ENSMUST00000178732 841 ntBASIC11.72□□□□□ -0.53
Cdh11P55288 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Cdh11P55288 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Zfp125-201ENSMUST00000079237 2488 ntBASIC11.72□□□□□ -0.53
Cdh11P55288 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdh11P55288 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdh11P55288 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC11.71□□□□□ -0.53
Cdh11P55288 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC11.71□□□□□ -0.53
Cdh11P55288 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdh11P55288 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdh11P55288 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdh11P55288 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdh11P55288 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdh11P55288 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC11.71□□□□□ -0.53
Cdh11P55288 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC11.71□□□□□ -0.53
Cdh11P55288 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms