Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Col2a1P28481 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Col2a1P28481 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col2a1P28481 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Col2a1P28481 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Col2a1P28481 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC14.38□□□□□ -0.11
Col2a1P28481 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Gm12266-201ENSMUST00000120311 962 ntBASIC14.38□□□□□ -0.11
Col2a1P28481 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC14.38□□□□□ -0.11
Col2a1P28481 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Col2a1P28481 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC14.38□□□□□ -0.11
Col2a1P28481 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC14.38□□□□□ -0.11
Col2a1P28481 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC14.38□□□□□ -0.11
Col2a1P28481 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col2a1P28481 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col2a1P28481 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC14.38□□□□□ -0.11
Col2a1P28481 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Col2a1P28481 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col2a1P28481 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col2a1P28481 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC14.38□□□□□ -0.11
Col2a1P28481 Gm12566-201ENSMUST00000121479 359 ntBASIC14.38□□□□□ -0.11
Col2a1P28481 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC14.38□□□□□ -0.11
Col2a1P28481 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Col2a1P28481 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC14.38□□□□□ -0.11
Col2a1P28481 AU022133-201ENSMUST00000200601 873 ntBASIC14.38□□□□□ -0.11
Col2a1P28481 AC107638.1-201ENSMUST00000213690 1061 ntBASIC14.38□□□□□ -0.11
Col2a1P28481 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC14.38□□□□□ -0.11
Col2a1P28481 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col2a1P28481 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC14.37□□□□□ -0.11
Col2a1P28481 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
Col2a1P28481 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Zkscan3-207ENSMUST00000223831 2101 ntBASIC14.37□□□□□ -0.11
Col2a1P28481 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col2a1P28481 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC14.37□□□□□ -0.11
Col2a1P28481 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 CU062626.3-201ENSMUST00000225522 1411 ntBASIC14.37□□□□□ -0.11
Col2a1P28481 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC14.37□□□□□ -0.11
Col2a1P28481 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC14.37□□□□□ -0.11
Col2a1P28481 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col2a1P28481 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Col2a1P28481 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC14.37□□□□□ -0.11
Col2a1P28481 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC14.37□□□□□ -0.11
Col2a1P28481 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC14.37□□□□□ -0.11
Col2a1P28481 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Gm27627-201ENSMUST00000183644 150 ntBASIC14.37□□□□□ -0.11
Col2a1P28481 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col2a1P28481 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms