Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Gm14726-201ENSMUST00000120623 896 ntBASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Gm26956-201ENSMUST00000182176 986 ntBASIC13.94□□□□□ -0.18
Trim54Q9ERP3 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Gm5904-201ENSMUST00000210286 865 ntBASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim54Q9ERP3 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm19221-201ENSMUST00000221827 1477 ntBASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Mir3102-201ENSMUST00000175555 104 ntBASIC13.93□□□□□ -0.18
Trim54Q9ERP3 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm2383-201ENSMUST00000181461 807 ntBASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Ighv8-10-201ENSMUST00000199579 358 ntBASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm43416-201ENSMUST00000201916 1015 ntBASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm44772-201ENSMUST00000207623 1191 ntBASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Gm43134-201ENSMUST00000199434 1886 ntBASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC13.93□□□□□ -0.18
Trim54Q9ERP3 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Gm11405-201ENSMUST00000118689 1556 ntBASIC13.92□□□□□ -0.18
Trim54Q9ERP3 AC139054.1-201ENSMUST00000226898 1598 ntBASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 79.6 ms