Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm12403-201ENSMUST00000121384 959 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm10359-201ENSMUST00000180167 1002 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm12033-201ENSMUST00000180654 1002 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm5559-201ENSMUST00000180755 1002 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm4335-201ENSMUST00000182581 1004 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm44855-201ENSMUST00000205725 362 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Gm1995-201ENSMUST00000220838 2602 ntBASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Lima1Q9ERG0 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Gm10576-201ENSMUST00000191927 825 ntBASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC12.71□□□□□ -0.37
Lima1Q9ERG0 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lima1Q9ERG0 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Lima1Q9ERG0 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Lima1Q9ERG0 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC12.71□□□□□ -0.38
Lima1Q9ERG0 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Lima1Q9ERG0 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC12.71□□□□□ -0.38
Lima1Q9ERG0 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
Lima1Q9ERG0 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Lima1Q9ERG0 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Lima1Q9ERG0 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Lima1Q9ERG0 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Lima1Q9ERG0 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Lima1Q9ERG0 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Daam2-202ENSMUST00000224595 1926 ntBASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Ldha-ps-201ENSMUST00000119390 995 ntBASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Gm42840-201ENSMUST00000200303 2251 ntBASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 AC166574.4-201ENSMUST00000227165 1937 ntBASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Gm36970-201ENSMUST00000193688 1859 ntBASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lima1Q9ERG0 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Gm21038-201ENSMUST00000222205 1383 ntBASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms