Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Gm14704-201ENSMUST00000120300 874 ntBASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Gm4271-201ENSMUST00000174444 973 ntBASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Gm18916-201ENSMUST00000198264 1246 ntBASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ddx56Q9D0R4 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Gm42840-201ENSMUST00000200303 2251 ntBASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Gm11424-201ENSMUST00000121929 829 ntBASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Gm29649-201ENSMUST00000185649 419 ntBASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Gm37042-201ENSMUST00000193816 581 ntBASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 n-R5s77-201ENSMUST00000083757 119 ntBASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Gm10305-201ENSMUST00000195331 2475 ntBASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ddx56Q9D0R4 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.52□□□□□ -0.24
Ddx56Q9D0R4 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Ddx56Q9D0R4 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ddx56Q9D0R4 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ddx56Q9D0R4 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ddx56Q9D0R4 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Ddx56Q9D0R4 Gm5422-201ENSMUST00000050717 2721 ntBASIC13.52□□□□□ -0.24
Ddx56Q9D0R4 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ddx56Q9D0R4 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms