Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Use1Q9CQ56 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Use1Q9CQ56 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Zkscan3-207ENSMUST00000223831 2101 ntBASIC12.17□□□□□ -0.46
Use1Q9CQ56 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gm16215-201ENSMUST00000161990 637 ntBASIC12.17□□□□□ -0.46
Use1Q9CQ56 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gm44397-201ENSMUST00000195950 113 ntBASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gm6983-201ENSMUST00000214912 628 ntBASIC12.17□□□□□ -0.46
Use1Q9CQ56 AC156560.2-201ENSMUST00000221232 264 ntBASIC12.17□□□□□ -0.46
Use1Q9CQ56 AC154305.4-201ENSMUST00000224520 614 ntBASIC12.17□□□□□ -0.46
Use1Q9CQ56 Itm2b-204ENSMUST00000228637 783 ntBASIC12.17□□□□□ -0.46
Use1Q9CQ56 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gm18630-201ENSMUST00000222109 1397 ntBASIC12.17□□□□□ -0.46
Use1Q9CQ56 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC12.17□□□□□ -0.46
Use1Q9CQ56 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Gm16202-201ENSMUST00000117532 544 ntBASIC12.16□□□□□ -0.46
Use1Q9CQ56 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 AC124732.1-201ENSMUST00000221551 910 ntBASIC12.16□□□□□ -0.46
Use1Q9CQ56 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Use1Q9CQ56 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Use1Q9CQ56 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Use1Q9CQ56 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.15□□□□□ -0.46
Use1Q9CQ56 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Use1Q9CQ56 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Use1Q9CQ56 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms