Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Gm15782-201ENSMUST00000121073 445 ntBASIC13.55□□□□□ -0.24
Clp1Q99LI9 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Gm22119-201ENSMUST00000175594 99 ntBASIC13.55□□□□□ -0.24
Clp1Q99LI9 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Gm3508-201ENSMUST00000186012 792 ntBASIC13.55□□□□□ -0.24
Clp1Q99LI9 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC13.55□□□□□ -0.24
Clp1Q99LI9 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.55□□□□□ -0.24
Clp1Q99LI9 Spcs1-203ENSMUST00000226374 592 ntBASIC13.55□□□□□ -0.24
Clp1Q99LI9 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Clp1Q99LI9 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Gm9025-201ENSMUST00000122415 1575 ntBASIC13.54□□□□□ -0.24
Clp1Q99LI9 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
Clp1Q99LI9 AC113060.1-201ENSMUST00000225689 1573 ntBASIC13.54□□□□□ -0.24
Clp1Q99LI9 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC13.54□□□□□ -0.24
Clp1Q99LI9 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Clp1Q99LI9 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC13.54□□□□□ -0.24
Clp1Q99LI9 Gm38116-201ENSMUST00000193873 1533 ntBASIC13.54□□□□□ -0.24
Clp1Q99LI9 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Gm14644-201ENSMUST00000116671 647 ntBASIC13.53□□□□□ -0.24
Clp1Q99LI9 Gm9062-201ENSMUST00000117712 727 ntBASIC13.53□□□□□ -0.24
Clp1Q99LI9 Gm13611-201ENSMUST00000118269 318 ntBASIC13.53□□□□□ -0.24
Clp1Q99LI9 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC13.53□□□□□ -0.24
Clp1Q99LI9 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Gm39404-201ENSMUST00000216350 313 ntBASIC13.53□□□□□ -0.24
Clp1Q99LI9 CT009738.1-201ENSMUST00000219031 809 ntBASIC13.53□□□□□ -0.24
Clp1Q99LI9 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC13.53□□□□□ -0.24
Clp1Q99LI9 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Clp1Q99LI9 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms