Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC15.16■□□□□ 0.02
Trim56Q80VI1 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC15.16■□□□□ 0.02
Trim56Q80VI1 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim56Q80VI1 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC15.15■□□□□ 0.02
Trim56Q80VI1 AC165260.3-202ENSMUST00000224550 1031 ntBASIC15.15■□□□□ 0.02
Trim56Q80VI1 AC132317.1-201ENSMUST00000227227 962 ntBASIC15.15■□□□□ 0.02
Trim56Q80VI1 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim56Q80VI1 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Gm15198-201ENSMUST00000117283 177 ntBASIC15.14■□□□□ 0.01
Trim56Q80VI1 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Gm8227-201ENSMUST00000223306 571 ntBASIC15.14■□□□□ 0.01
Trim56Q80VI1 AC093022.5-201ENSMUST00000226841 1079 ntBASIC15.14■□□□□ 0.01
Trim56Q80VI1 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Gm24526-201ENSMUST00000082921 158 ntBASIC15.14■□□□□ 0.01
Trim56Q80VI1 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Gm3287-205ENSMUST00000228893 1332 ntBASIC15.14■□□□□ 0.01
Trim56Q80VI1 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms